Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00593.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1370
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34


Found at i:975 original size:83 final size:83

Alignment explanation


    Indices: 836--998  Score: 308
    Period size: 83  Copynumber: 2.0  Consensus size: 83

        826 TTCCCTAATG

                                                                             
        836 GAGACATTACAATTTTGATTGGTGATTGGTACACTCGCAACCACACGGCTTTGAGAAAGGCACTT
          1 GAGACATTACAATTTTGATTGGTGATTGGTACACTCGCAACCACACGGCTTTGAGAAAGGCACTT

                              
        901 GATGCTAGAAAAGATATA
         66 GATGCTAGAAAAGATATA

                                                            *                
        919 GAGACATTACAATTTTGATTGGTGATTGGTACACTCGCAACCACACGGTTTTGAGAAAGGCACTT
          1 GAGACATTACAATTTTGATTGGTGATTGGTACACTCGCAACCACACGGCTTTGAGAAAGGCACTT

                  *        
        984 GATGCTGGAAAAGAT
         66 GATGCTAGAAAAGAT

        999 CTTGGGATGC


Statistics
Matches: 78,  Mismatches: 2, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  83   78  1.00

ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27


Consensus pattern (83 bp):   
GAGACATTACAATTTTGATTGGTGATTGGTACACTCGCAACCACACGGCTTTGAGAAAGGCACTT
GATGCTAGAAAAGATATA
Done.