Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00604.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36


Found at i:861 original size:19 final size:19

Alignment explanation


    Indices: 816--855  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        806 TATTTTGTTA

                    *          
        816 TTTATTTTTATTTCATCTT
          1 TTTATTTTCATTTCATCTT

                               
        835 TTTATTTTCATTTCATCTT
          1 TTTATTTTCATTTCATCTT

              
        854 TT
          1 TT

        856 ACTTTTTACT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72


Consensus pattern (19 bp):   
TTTATTTTCATTTCATCTT
Done.