Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00588.F17

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5011
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2402 original size:69 final size:69

Alignment explanation


    Indices: 2291--2425  Score: 252
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       2281 GATAGGAAAA

                                                                    *        
       2291 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG

                
       2356 GCTG
         66 GCTG

                         *                                                   
       2360 ACAGGTTCCAAAATAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
          1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG

             
       2425 G
         66 G

       2426 TTGATAGAGT


Statistics
Matches: 64,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  69   64  1.00

ACGTcount: A:0.27, C:0.12, G:0.33, T:0.29


Consensus pattern (69 bp):   
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Done.