Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00616.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6940
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:4398 original size:24 final size:24

Alignment explanation


    Indices: 4353--4404  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       4343 GACTTCCGCA

                                   *
       4353 GCTGTTGCAATAGCAGCAGCTGCT
          1 GCTGTTGCAATAGCAGCAGCTGCG

                           *  *      
       4377 GCTGTTGCAA-AGGCTGCGGCTGCG
          1 GCTGTTGCAATA-GCAGCAGCTGCG

                
       4401 GCTG
          1 GCTG

       4405 CCAATGTTTC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  23    1  0.04
  24   23  0.96

ACGTcount: A:0.15, C:0.25, G:0.37, T:0.23


Consensus pattern (24 bp):   
GCTGTTGCAATAGCAGCAGCTGCG
Done.