Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00663.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:233 original size:60 final size:60

Alignment explanation


    Indices: 136--250  Score: 203
    Period size: 60  Copynumber: 1.9  Consensus size: 60

        126 ATGAGTCTCA

                                                                        
        136 AGATGAACGCCCCAGATCCAGTTCGGCGCAGGCGGTGTCAGGGGATCAGGATCACCAACG
          1 AGATGAACGCCCCAGATCCAGTTCGGCGCAGGCGGTGTCAGGGGATCAGGATCACCAACG

                      *            *        *                      
        196 AGATGAACGCTCCAGATCCAGTTGGGCGCAGGTGGTGTCAGGGGATCAGGATCAC
          1 AGATGAACGCCCCAGATCCAGTTCGGCGCAGGCGGTGTCAGGGGATCAGGATCAC

        251 GAAAAACAGG


Statistics
Matches: 52,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  60   52  1.00

ACGTcount: A:0.24, C:0.25, G:0.35, T:0.16


Consensus pattern (60 bp):   
AGATGAACGCCCCAGATCCAGTTCGGCGCAGGCGGTGTCAGGGGATCAGGATCACCAACG
Done.