Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00665.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:658 original size:8 final size:8

Alignment explanation


    Indices: 645--688  Score: 61
    Period size: 8  Copynumber: 5.5  Consensus size: 8

        635 AAACAAGAAC

                    
        645 ATATCTAT
          1 ATATCTAT

                    
        653 ATATCTAT
          1 ATATCTAT

            *       
        661 CTATCTAT
          1 ATATCTAT

                *   
        669 ATATATAT
          1 ATATCTAT

                *   
        677 ATATATAT
          1 ATATCTAT

                
        685 ATAT
          1 ATAT

        689 GAATAGTTCA


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   8   33  1.00

ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50


Consensus pattern (8 bp):   
ATATCTAT

Found at i:673 original size:4 final size:4

Alignment explanation


    Indices: 645--688  Score: 52
    Period size: 4  Copynumber: 11.0  Consensus size: 4

        635 AAACAAGAAC

                 *         *    *    *                            
        645 ATAT CTAT ATAT CTAT CTAT CTAT ATAT ATAT ATAT ATAT ATAT
          1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT

        689 GAATAGTTCA


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   4   36  1.00

ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50


Consensus pattern (4 bp):   
ATAT

Done.