Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00667.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2164
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30


Found at i:1255 original size:61 final size:61

Alignment explanation


    Indices: 1185--1307  Score: 237
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       1175 AGAGGGGTGC

                                                                         
       1185 TGAAAATAGTTGTTCATTGCCTGCTTTCTATGTTTTAAGTCGGAAAAAATCAATGGGGGTA
          1 TGAAAATAGTTGTTCATTGCCTGCTTTCTATGTTTTAAGTCGGAAAAAATCAATGGGGGTA

                                                       *                 
       1246 TGAAAATAGTTGTTCATTGCCTGCTTTCTATGTTTTAAGTCGGCAAAAATCAATGGGGGTA
          1 TGAAAATAGTTGTTCATTGCCTGCTTTCTATGTTTTAAGTCGGAAAAAATCAATGGGGGTA

             
       1307 T
          1 T

       1308 CTTTTTGCTG


Statistics
Matches: 61,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  61   61  1.00

ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37


Consensus pattern (61 bp):   
TGAAAATAGTTGTTCATTGCCTGCTTTCTATGTTTTAAGTCGGAAAAAATCAATGGGGGTA
Done.