Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00668.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5107
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32


Found at i:369 original size:46 final size:46

Alignment explanation


    Indices: 302--394  Score: 186
    Period size: 46  Copynumber: 2.0  Consensus size: 46

        292 GTGCTAAAAA

                                                          
        302 AGGGGATTTTCTATAAAGTTTGATGAGAAGATGCTTTCAAGTACAT
          1 AGGGGATTTTCTATAAAGTTTGATGAGAAGATGCTTTCAAGTACAT

                                                          
        348 AGGGGATTTTCTATAAAGTTTGATGAGAAGATGCTTTCAAGTACAT
          1 AGGGGATTTTCTATAAAGTTTGATGAGAAGATGCTTTCAAGTACAT

             
        394 A
          1 A

        395 ATTTTCTACT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   47  1.00

ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34


Consensus pattern (46 bp):   
AGGGGATTTTCTATAAAGTTTGATGAGAAGATGCTTTCAAGTACAT
Done.