Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00360.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3148
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31


Found at i:615 original size:3 final size:3

Alignment explanation


    Indices: 604--633  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        594 GCAGCAGCAG

                 *                                 
        604 CAA CTA CAA CAA CAA CAA CAA CAA CAA CAA
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA

        634 TCTCCTCAGG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.63, C:0.33, G:0.00, T:0.03


Consensus pattern (3 bp):   
CAA

Done.