Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g00687.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2052
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Found at i:1718 original size:15 final size:15
Alignment explanation
Indices: 1683--1724 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
1673 AACTCGACTC
1683 GATTTGACTCGAATTT
1 GATTTGACTCG-ATTT
*
1699 -TTTTGACTCGATTT
1 GATTTGACTCGATTT
*
1713 GATTTGATTCGA
1 GATTTGACTCGA
1725 AAAAATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (15 bp):
GATTTGACTCGATTT
Done.