Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00687.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2052
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40


Found at i:1718 original size:15 final size:15

Alignment explanation

Indices: 1683--1724 Score: 50 Period size: 15 Copynumber: 2.8 Consensus size: 15 1673 AACTCGACTC 1683 GATTTGACTCGAATTT 1 GATTTGACTCG-ATTT * 1699 -TTTTGACTCGATTT 1 GATTTGACTCGATTT * 1713 GATTTGATTCGA 1 GATTTGACTCGA 1725 AAAAATTTCA Statistics Matches: 22, Mismatches: 3, Indels: 3 0.79 0.11 0.11 Matches are distributed among these distances: 14 4 0.18 15 18 0.82 ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48 Consensus pattern (15 bp): GATTTGACTCGATTT Done.