Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00690.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3592
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28


Found at i:118 original size:2 final size:2

Alignment explanation


    Indices: 113--142  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        103 AAAAAAGCAG

                                             *          
        113 CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

        143 ATTTTATTTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
CT

Done.