Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00699.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2338
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:277 original size:9 final size:9

Alignment explanation


    Indices: 265--298  Score: 50
    Period size: 9  Copynumber: 3.8  Consensus size: 9

        255 GCAGCGTCAC

                    *
        265 CAGCAGCAG
          1 CAGCAGCAA

                     
        274 CAGCAGCAA
          1 CAGCAGCAA

              *      
        283 CAACAGCAA
          1 CAGCAGCAA

                   
        292 CAGCAGC
          1 CAGCAGC

        299 CCAAACCGTT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.41, C:0.35, G:0.24, T:0.00


Consensus pattern (9 bp):   
CAGCAGCAA
Done.