Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00701.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1435
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33


Found at i:97 original size:3 final size:3

Alignment explanation


    Indices: 89--129  Score: 73
    Period size: 3  Copynumber: 13.7  Consensus size: 3

         79 TCATCTCCCT

                                                            *     
         89 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC CTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

        130 GTTTTAAATT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTC

Done.