Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00702.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4912
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:3118 original size:15 final size:15

Alignment explanation


    Indices: 3081--3111  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3071 AGAGATCAAG

                           
       3081 GCATCCAAAAGGACA
          1 GCATCCAAAAGGACA

                           
       3096 GCATCCAAAAGGACA
          1 GCATCCAAAAGGACA

             
       3111 G
          1 G

       3112 TCTCCAATTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.45, C:0.26, G:0.23, T:0.06


Consensus pattern (15 bp):   
GCATCCAAAAGGACA
Done.