Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00702.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3856
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:2062 original size:15 final size:15

Alignment explanation


    Indices: 2025--2055  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2015 AGAGATCAAG

                           
       2025 GCATCCAAAAGGACA
          1 GCATCCAAAAGGACA

                           
       2040 GCATCCAAAAGGACA
          1 GCATCCAAAAGGACA

             
       2055 G
          1 G

       2056 TCTCCAATTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.45, C:0.26, G:0.23, T:0.06


Consensus pattern (15 bp):   
GCATCCAAAAGGACA
Done.