Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00716.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3475
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:1843 original size:47 final size:47

Alignment explanation


    Indices: 1744--1873  Score: 138
    Period size: 47  Copynumber: 2.8  Consensus size: 47

       1734 GTTGTAGACA

                       *  *                    *           
       1744 GTAGTTTGGAAGATATTCATCTGAAATCTTATAGTTCTGTTTACACT
          1 GTAGTTTGGAAAATGTTCATCTGAAATCTTATAGTACTGTTTACACT

            *              *                      *    **  
       1791 ATAGTTTGGAAAATGCTCATCTGAAATCTTATAGTACTTTTTATGCT
          1 GTAGTTTGGAAAATGTTCATCTGAAATCTTATAGTACTGTTTACACT

                   *               *              
       1838 GTAGTTCAGG-AAATGTTCATCTCAAAT-TCTATAGTA
          1 GTAGTT-TGGAAAATGTTCATCTGAAATCT-TATAGTA

       1874 TTGTGTAGAT


Statistics
Matches: 69,  Mismatches: 12, Indels: 4
        0.81            0.14        0.05

Matches are distributed among these distances:
  46    1  0.01
  47   66  0.96
  48    2  0.03

ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41


Consensus pattern (47 bp):   
GTAGTTTGGAAAATGTTCATCTGAAATCTTATAGTACTGTTTACACT
Done.