Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00721.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 960

Length: 1600
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:736 original size:21 final size:21

Alignment explanation


    Indices: 712--802  Score: 164
    Period size: 21  Copynumber: 4.3  Consensus size: 21

        702 ACTACAAATT

                                 
        712 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                     *           
        733 GCCTCCTGCCGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        754 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        775 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

            *      
        796 TCCTCCT
          1 GCCTCCT

        803 CCAATACAAA


Statistics
Matches: 67,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   67  1.00

ACGTcount: A:0.04, C:0.45, G:0.18, T:0.33


Consensus pattern (21 bp):   
GCCTCCTGCTGCTTTTGCACC

Done.