Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00721.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29


Found at i:363 original size:21 final size:21

Alignment explanation


    Indices: 339--429  Score: 164
    Period size: 21  Copynumber: 4.3  Consensus size: 21

        329 ACTACAAATT

                                 
        339 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                     *           
        360 GCCTCCTGCCGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        381 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        402 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

            *      
        423 TCCTCCT
          1 GCCTCCT

        430 CCAATACAAA


Statistics
Matches: 67,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   67  1.00

ACGTcount: A:0.04, C:0.45, G:0.18, T:0.33


Consensus pattern (21 bp):   
GCCTCCTGCTGCTTTTGCACC

Done.