Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00721.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 579

Length: 966
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28


Found at i:102 original size:21 final size:21

Alignment explanation


    Indices: 78--168  Score: 164
    Period size: 21  Copynumber: 4.3  Consensus size: 21

         68 ACTACAAATT

                                 
         78 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                     *           
         99 GCCTCCTGCCGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        120 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

                                 
        141 GCCTCCTGCTGCTTTTGCACC
          1 GCCTCCTGCTGCTTTTGCACC

            *      
        162 TCCTCCT
          1 GCCTCCT

        169 CCAATACAAA


Statistics
Matches: 67,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   67  1.00

ACGTcount: A:0.04, C:0.45, G:0.18, T:0.33


Consensus pattern (21 bp):   
GCCTCCTGCTGCTTTTGCACC

Done.