Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00722.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3466
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30


Found at i:3041 original size:108 final size:108

Alignment explanation


    Indices: 2852--3065  Score: 419
    Period size: 108  Copynumber: 2.0  Consensus size: 108

       2842 GGTTTGAAGT

                                                                             
       2852 TATAGATGTGCAGAAACTGATGGCTGGTGATTGGGTCCTGACTCTGGAGCTTGACTTGGCTAACT
          1 TATAGATGTGCAGAAACTGATGGCTGGTGATTGGGTCCTGACTCTGGAGCTTGACTTGGCTAACT

                                                       
       2917 TCATTCCTTCTAAATGGGGGTTCCAACAATAAAATTCCAAAGA
         66 TCATTCCTTCTAAATGGGGGTTCCAACAATAAAATTCCAAAGA

                                                                             
       2960 TATAGATGTGCAGAAACTGATGGCTGGTGATTGGGTCCTGACTCTGGAGCTTGACTTGGCTAACT
          1 TATAGATGTGCAGAAACTGATGGCTGGTGATTGGGTCCTGACTCTGGAGCTTGACTTGGCTAACT

                                   *                 
       3025 TCATTCCTTCTAAATGGGGGTTCTAACAATAAAATTCCAAA
         66 TCATTCCTTCTAAATGGGGGTTCCAACAATAAAATTCCAAA

       3066 TGACCGATTC


Statistics
Matches: 105,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 108  105  1.00

ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Consensus pattern (108 bp):   
TATAGATGTGCAGAAACTGATGGCTGGTGATTGGGTCCTGACTCTGGAGCTTGACTTGGCTAACT
TCATTCCTTCTAAATGGGGGTTCCAACAATAAAATTCCAAAGA
Done.