Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00723.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1809
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Found at i:1713 original size:4 final size:4

Alignment explanation


    Indices: 1704--1728  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

       1694 TTGAGAGAAA

                                           
       1704 AGTG AGTG AGTG AGTG AGTG AGTG A
          1 AGTG AGTG AGTG AGTG AGTG AGTG A

       1729 CCCTTTAACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.28, C:0.00, G:0.48, T:0.24


Consensus pattern (4 bp):   
AGTG

Done.