Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00727.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:503 original size:32 final size:32

Alignment explanation


    Indices: 467--564  Score: 187
    Period size: 32  Copynumber: 3.1  Consensus size: 32

        457 TAGTGTCAAA

                                            
        467 CGATTGCCGACTGTTTAATTGTTGTACTGAGT
          1 CGATTGCCGACTGTTTAATTGTTGTACTGAGT

                                        *   
        499 CGATTGCCGACTGTTTAATTGTTGTACTTAGT
          1 CGATTGCCGACTGTTTAATTGTTGTACTGAGT

                                            
        531 CGATTGCCGACTGTTTAATTGTTGTACTGAGT
          1 CGATTGCCGACTGTTTAATTGTTGTACTGAGT

              
        563 CG
          1 CG

        565 TGTATCTTAT


Statistics
Matches: 64,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   64  1.00

ACGTcount: A:0.18, C:0.16, G:0.24, T:0.41


Consensus pattern (32 bp):   
CGATTGCCGACTGTTTAATTGTTGTACTGAGT
Done.