Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00736.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3147
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30


Found at i:97 original size:3 final size:3

Alignment explanation


    Indices: 91--115  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

         81 CTTTCTAATT

                                             
         91 TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC T

        116 ACTTTAGTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Found at i:795 original size:12 final size:12

Alignment explanation


    Indices: 778--803  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        768 CCTGATTTTT

                        
        778 CTTCAGCTTCTC
          1 CTTCAGCTTCTC

                        
        790 CTTCAGCTTCTC
          1 CTTCAGCTTCTC

              
        802 CT
          1 CT

        804 GGTTCAGTTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.08, C:0.42, G:0.08, T:0.42


Consensus pattern (12 bp):   
CTTCAGCTTCTC
Done.