Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00737.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2741
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27


Found at i:1314 original size:12 final size:12

Alignment explanation


    Indices: 1297--1350  Score: 90
    Period size: 12  Copynumber: 4.5  Consensus size: 12

       1287 AAGTACAAGC

                        
       1297 ACAAACCCGAGG
          1 ACAAACCCGAGG

                       *
       1309 ACAAACCCGAGC
          1 ACAAACCCGAGG

                        
       1321 ACAAACCCGAGG
          1 ACAAACCCGAGG

             *          
       1333 AAAAACCCGAGG
          1 ACAAACCCGAGG

                  
       1345 ACAAAC
          1 ACAAAC

       1351 ACGAACACAA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   38  1.00

ACGTcount: A:0.46, C:0.33, G:0.20, T:0.00


Consensus pattern (12 bp):   
ACAAACCCGAGG

Found at i:1362 original size:24 final size:24

Alignment explanation


    Indices: 1294--1362  Score: 66
    Period size: 24  Copynumber: 2.9  Consensus size: 24

       1284 CGTAAGTACA

                     *   **         
       1294 AGCACAAACCCGAGGACAAACCCG
          1 AGCACAAACACGAACACAAACCCG

                     *   ** *       
       1318 AGCACAAACCCGAGGAAAAACCCG
          1 AGCACAAACACGAACACAAACCCG

              *                  
       1342 AGGACAAACACGAACACAAAC
          1 AGCACAAACACGAACACAAAC

       1363 TACTTGCCAC


Statistics
Matches: 39,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   39  1.00

ACGTcount: A:0.48, C:0.33, G:0.19, T:0.00


Consensus pattern (24 bp):   
AGCACAAACACGAACACAAACCCG
Done.