Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00745.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3420
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32


Found at i:2954 original size:29 final size:29

Alignment explanation


    Indices: 2902--2970  Score: 81
    Period size: 29  Copynumber: 2.4  Consensus size: 29

       2892 ATCAGTTCCC

                         *                
       2902 CCTCCCCACCTCATCATGCATATCATCCAG
          1 CCTCCCCACCTCACCATGCATATCAT-CAG

                                          
       2932 CCTCCCC-CCTCACCATAGC-TATCATCAG
          1 CCTCCCCACCTCACCAT-GCATATCATCAG

                *       
       2960 CC-CACCACCTC
          1 CCTCCCCACCTC

       2971 TCCACCCCAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 6
        0.81            0.05        0.14

Matches are distributed among these distances:
  27    3  0.09
  28    9  0.26
  29   14  0.40
  30    9  0.26

ACGTcount: A:0.22, C:0.52, G:0.06, T:0.20


Consensus pattern (29 bp):   
CCTCCCCACCTCACCATGCATATCATCAG

Done.