Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00754.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3398
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32


Found at i:2326 original size:30 final size:30

Alignment explanation


    Indices: 2290--2369  Score: 160
    Period size: 30  Copynumber: 2.7  Consensus size: 30

       2280 TTTGTTGGTC

                                          
       2290 CCATCTTGCTCATTTCCAGTACGGTTAGAG
          1 CCATCTTGCTCATTTCCAGTACGGTTAGAG

                                          
       2320 CCATCTTGCTCATTTCCAGTACGGTTAGAG
          1 CCATCTTGCTCATTTCCAGTACGGTTAGAG

                                
       2350 CCATCTTGCTCATTTCCAGT
          1 CCATCTTGCTCATTTCCAGT

       2370 CGGGCTATTA


Statistics
Matches: 50,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   50  1.00

ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35


Consensus pattern (30 bp):   
CCATCTTGCTCATTTCCAGTACGGTTAGAG
Done.