Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00756.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23


Found at i:491 original size:21 final size:21

Alignment explanation


    Indices: 467--528  Score: 97
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        457 CTTGTGGAAT

                *                
        467 GAGGCAGAGGAAACTGAGGAG
          1 GAGGTAGAGGAAACTGAGGAG

                                 
        488 GAGGTAGAGGAAACTGAGGAG
          1 GAGGTAGAGGAAACTGAGGAG

             *           *      
        509 GTGGTAGAGGAAATTGAGGA
          1 GAGGTAGAGGAAACTGAGGA

        529 TACACTTCCA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.37, C:0.05, G:0.47, T:0.11


Consensus pattern (21 bp):   
GAGGTAGAGGAAACTGAGGAG
Done.