Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00762.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 888

Length: 1481
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:1009 original size:14 final size:14

Alignment explanation


    Indices: 990--1025  Score: 56
    Period size: 13  Copynumber: 2.6  Consensus size: 14

        980 TGGTTCAAGA

                          
        990 GCTGAAAGGCAGCG
          1 GCTGAAAGGCAGCG

                        * 
       1004 GCTGAAA-GCAGTG
          1 GCTGAAAGGCAGCG

                     
       1017 GCTGAAAGG
          1 GCTGAAAGG

       1026 GAGAAGGTGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  13   12  0.60
  14    8  0.40

ACGTcount: A:0.31, C:0.17, G:0.42, T:0.11


Consensus pattern (14 bp):   
GCTGAAAGGCAGCG

Done.