Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00773.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30


Found at i:1168 original size:3 final size:3

Alignment explanation


    Indices: 1160--1213  Score: 108
    Period size: 3  Copynumber: 18.0  Consensus size: 3

       1150 AAGAGTTTTG

                                                                           
       1160 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC

                   
       1208 ATC ATC
          1 ATC ATC

       1214 CCTTTGAGAC


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   51  1.00

ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATC

Done.