Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00775.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 516
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26


Found at i:162 original size:36 final size:36

Alignment explanation


    Indices: 104--190  Score: 93
    Period size: 36  Copynumber: 2.4  Consensus size: 36

         94 GGGGACACCC

                     *  *           * *   * *   
        104 AGGATATCCACCACATGGAGGACATCTTCCTCCCGG
          1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG

               *             *               *  
        140 AGGGTATCCCCCTCATGTAGGACACCATCCACATGG
          1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG

                           
        176 AGGATATCCCCCTCA
          1 AGGATATCCCCCTCA

        191 GGGTTATCCT


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  36   41  1.00

ACGTcount: A:0.25, C:0.34, G:0.21, T:0.20


Consensus pattern (36 bp):   
AGGATATCCCCCTCATGGAGGACACCATCCACACGG
Done.