Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00591.F30

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3746
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31


Found at i:2814 original size:17 final size:17

Alignment explanation


    Indices: 2788--2820  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       2778 ACTAGACCTT

                             
       2788 TTATAAAACAACTTAAG
          1 TTATAAAACAACTTAAG

                 *          
       2805 TTATAGAACAACTTAA
          1 TTATAAAACAACTTAA

       2821 TGGTTGTTCC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30


Consensus pattern (17 bp):   
TTATAAAACAACTTAAG
Done.