Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00784.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2398
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:221 original size:6 final size:6

Alignment explanation


    Indices: 192--222  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        182 GTCCCAACCC

                 *                              
        192 CAGCCC CAGCCT CAGCCT CAGCCT CAGCCT C
          1 CAGCCT CAGCCT CAGCCT CAGCCT CAGCCT C

        223 GGAGACCCCG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.16, C:0.55, G:0.16, T:0.13


Consensus pattern (6 bp):   
CAGCCT

Done.