Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00786.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5622
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:4535 original size:7 final size:7

Alignment explanation


    Indices: 4523--4550  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

       4513 ATATATGCAC

                   
       4523 ATGGAAT
          1 ATGGAAT

                   
       4530 ATGGAAT
          1 ATGGAAT

                   
       4537 ATGGAAT
          1 ATGGAAT

                   
       4544 ATGGAAT
          1 ATGGAAT

       4551 GCTAATGATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29


Consensus pattern (7 bp):   
ATGGAAT

Done.