Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00593.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1838
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27


Found at i:1701 original size:61 final size:63

Alignment explanation


    Indices: 1601--1719  Score: 138
    Period size: 61  Copynumber: 1.9  Consensus size: 63

       1591 TATGCTCTTA

                                   *        *             *                 
       1601 TATGTAGCAGAGTCCGAGTCAACCGAGACCAGTTCAATCTGTTT-TTGATTGTTATAAATCGTG
          1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCT-TTTATCGATTGTTATAAATCGTG

                   *              *                         *          
       1664 TATGTAGGAGAGT-C-AGTCAATAGAGACCA-ATCAAATCTTTTATCGGTTGTTATAAA
          1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATC-AATCTTTTATCGATTGTTATAAA

       1720 CTATGTAGCC


Statistics
Matches: 48,  Mismatches: 6, Indels: 6
        0.80            0.10        0.10

Matches are distributed among these distances:
  60    5  0.10
  61   30  0.62
  62    1  0.02
  63   12  0.25

ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Consensus pattern (63 bp):   
TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCTTTTATCGATTGTTATAAATCGTG
Done.