Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00810.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28


Found at i:1200 original size:4 final size:4

Alignment explanation


    Indices: 1191--1217  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

       1181 ACGAGGGTTT

                                             
       1191 TTTC TTTC TTTC TTTC TTTC TTTC TTT
          1 TTTC TTTC TTTC TTTC TTTC TTTC TTT

       1218 TTTTTTTTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78


Consensus pattern (4 bp):   
TTTC

Done.