Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00810.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3674
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28


Found at i:25 original size:2 final size:2

Alignment explanation


    Indices: 8--65  Score: 100
    Period size: 2  Copynumber: 29.5  Consensus size: 2

          1 CAAATAC

                              *                                           
          8 AG AG A- AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                     
         49 AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG A

         66 AAGAAATAAA


Statistics
Matches: 53,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   52  0.98

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:3539 original size:4 final size:4

Alignment explanation


    Indices: 3530--3556  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

       3520 ACGAGGGTTT

                                             
       3530 TTTC TTTC TTTC TTTC TTTC TTTC TTT
          1 TTTC TTTC TTTC TTTC TTTC TTTC TTT

       3557 TTTTTTTTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78


Consensus pattern (4 bp):   
TTTC

Done.