Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00816.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3869
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31


Found at i:2105 original size:31 final size:31

Alignment explanation


    Indices: 2070--2131  Score: 99
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2060 TTATAATTTT

                     *                      
       2070 GTTATTAAACTAT-TTAAAAGTTTTTATTTAA
          1 GTTATTAAAATATGTT-AAAGTTTTTATTTAA

                                           
       2101 GTTATTAAAATATGTTAAAGTTTTTATTTAA
          1 GTTATTAAAATATGTTAAAGTTTTTATTTAA

       2132 AACACTTGAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  31   27  0.93
  32    2  0.07

ACGTcount: A:0.39, C:0.02, G:0.08, T:0.52


Consensus pattern (31 bp):   
GTTATTAAAATATGTTAAAGTTTTTATTTAA

Found at i:2249 original size:31 final size:31

Alignment explanation


    Indices: 2213--2277  Score: 121
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       2203 GGTAGATCAA

                                         * 
       2213 TATTTATCAACGAGTAGATCTAAGTTGATTT
          1 TATTTATCAACGAGTAGATCTAAGTTGATCT

                                           
       2244 TATTTATCAACGAGTAGATCTAAGTTGATCT
          1 TATTTATCAACGAGTAGATCTAAGTTGATCT

               
       2275 TAT
          1 TAT

       2278 AATCACTGTT


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42


Consensus pattern (31 bp):   
TATTTATCAACGAGTAGATCTAAGTTGATCT
Done.