Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00828.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25


Found at i:407 original size:6 final size:6

Alignment explanation


    Indices: 356--407  Score: 59
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        346 CGAGGCTGAA

                 *      *          *                       *     * 
        356 GCTCAA GCTCAA GCTCAG GCACAG GCTCAG GCTCAG GCTCAA GCTCTG
          1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG

                
        404 GCTC
          1 GCTC

        408 GATACAACAA


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17


Consensus pattern (6 bp):   
GCTCAG
Done.