Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00828.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4999
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1693 original size:6 final size:6

Alignment explanation


    Indices: 1682--1718  Score: 56
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       1672 ATATAATCTC

                                          *           
       1682 TTCTTT TTCTTT TTCTTT TTCTTT TTTTTT TTGCTTT
          1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TT-CTTT

       1719 ATTTAATTTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 1
        0.90            0.06        0.03

Matches are distributed among these distances:
   6   25  0.89
   7    3  0.11

ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84


Consensus pattern (6 bp):   
TTCTTT

Found at i:4132 original size:6 final size:6

Alignment explanation


    Indices: 4081--4132  Score: 59
    Period size: 6  Copynumber: 8.7  Consensus size: 6

       4071 CGAGGCTGAA

                 *      *          *                       *     * 
       4081 GCTCAA GCTCAA GCTCAG GCACAG GCTCAG GCTCAG GCTCAA GCTCTG
          1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG

                
       4129 GCTC
          1 GCTC

       4133 GATACAACAA


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17


Consensus pattern (6 bp):   
GCTCAG
Done.