Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00834.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3098
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31


Found at i:38 original size:17 final size:16

Alignment explanation


    Indices: 16--57  Score: 66
    Period size: 17  Copynumber: 2.5  Consensus size: 16

          6 AAAAAAAAAG

                             
         16 AAAAAAAATATTACCCC
          1 AAAAAAAATATTA-CCC

                             
         33 AAAAAAACATATTACCC
          1 AAAAAAA-ATATTACCC

                    
         50 AAAAAAAA
          1 AAAAAAAA

         58 GAGGGGGAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    1  0.04
  17   17  0.71
  18    6  0.25

ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14


Consensus pattern (16 bp):   
AAAAAAAATATTACCC

Found at i:39 original size:18 final size:17

Alignment explanation


    Indices: 16--57  Score: 66
    Period size: 18  Copynumber: 2.4  Consensus size: 17

          6 AAAAAAAAAG

                              
         16 AAAAAAAATATTACCCCA
          1 AAAAAAAATATTA-CCCA

                  *          
         34 AAAAAACATATTACCCA
          1 AAAAAAAATATTACCCA

                   
         51 AAAAAAA
          1 AAAAAAA

         58 GAGGGGGAAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  17   10  0.45
  18   12  0.55

ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14


Consensus pattern (17 bp):   
AAAAAAAATATTACCCA
Done.