Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00858.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3499
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34


Found at i:3155 original size:17 final size:16

Alignment explanation


    Indices: 3129--3160  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

       3119 GAATACAATG

                            
       3129 ATAATAAGATGATTAA
          1 ATAATAAGATGATTAA

                            
       3145 ATAAGTAAGATGATTA
          1 ATAA-TAAGATGATTA

       3161 TTTTGAGTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31


Consensus pattern (16 bp):   
ATAATAAGATGATTAA
Done.