Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00865.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2461
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32


Found at i:2280 original size:35 final size:35

Alignment explanation


    Indices: 2234--2304  Score: 142
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       2224 CACCCGAGAG

                                               
       2234 CCTAATAAACTTCACCAGCAATTATTTGATTAACC
          1 CCTAATAAACTTCACCAGCAATTATTTGATTAACC

                                               
       2269 CCTAATAAACTTCACCAGCAATTATTTGATTAACC
          1 CCTAATAAACTTCACCAGCAATTATTTGATTAACC

             
       2304 C
          1 C

       2305 TGCATATTAG


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.37, C:0.27, G:0.06, T:0.31


Consensus pattern (35 bp):   
CCTAATAAACTTCACCAGCAATTATTTGATTAACC
Done.