Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00884.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1726
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1522 original size:17 final size:18

Alignment explanation


    Indices: 1500--1538  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1490 TATCAACTGT

                               
       1500 AAAATG-AACA-GAAAATA
          1 AAAATGAAACAGGAAAA-A

                              
       1517 AAAATGAAACAGGAAAAA
          1 AAAATGAAACAGGAAAAA

                
       1535 AAAA
          1 AAAA

       1539 AATGGTGCGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  17    6  0.30
  18    9  0.45
  19    5  0.25

ACGTcount: A:0.74, C:0.05, G:0.13, T:0.08


Consensus pattern (18 bp):   
AAAATGAAACAGGAAAAA

Done.