Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00909.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2267
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:708 original size:17 final size:16

Alignment explanation


    Indices: 677--711  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 16

        667 ATTTTGGCTT

                            
        677 ATTTTTTTGTATTTTC
          1 ATTTTTTTGTATTTTC

                     *       
        693 ATTTTGTTTTTATTTTC
          1 ATTTT-TTTGTATTTTC

              
        710 AT
          1 AT

        712 ACGGCCCGGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    5  0.29
  17   12  0.71

ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74


Consensus pattern (16 bp):   
ATTTTTTTGTATTTTC
Done.