Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00924.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3877
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29


Found at i:2957 original size:48 final size:49

Alignment explanation


    Indices: 2872--2971  Score: 184
    Period size: 48  Copynumber: 2.1  Consensus size: 49

       2862 GGAAAATCCA

                               *                             
       2872 GGGGAGCATGAAGCAATGCGGAAGATGAGAAATGAATTTATGGTGAACT
          1 GGGGAGCATGAAGCAATGCAGAAGATGAGAAATGAATTTATGGTGAACT

                                                             
       2921 GGGGAGCATGAAGCAATG-AGAAGATGAGAAATGAATTTATGGTGAACT
          1 GGGGAGCATGAAGCAATGCAGAAGATGAGAAATGAATTTATGGTGAACT

               
       2969 GGG
          1 GGG

       2972 ATGGTCTGCG


Statistics
Matches: 50,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  48   32  0.64
  49   18  0.36

ACGTcount: A:0.37, C:0.07, G:0.36, T:0.20


Consensus pattern (49 bp):   
GGGGAGCATGAAGCAATGCAGAAGATGAGAAATGAATTTATGGTGAACT
Done.