Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00925.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3981
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:231 original size:48 final size:48

Alignment explanation


    Indices: 160--256  Score: 185
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        150 GCCATGTGGG

                              *                             
        160 TGTAGTAAACGCATTAACTCCAAAAGCCAAAAAGGAAAAAAAAATCTA
          1 TGTAGTAAACGCATTAACCCCAAAAGCCAAAAAGGAAAAAAAAATCTA

                                                            
        208 TGTAGTAAACGCATTAACCCCAAAAGCCAAAAAGGAAAAAAAAATCTA
          1 TGTAGTAAACGCATTAACCCCAAAAGCCAAAAAGGAAAAAAAAATCTA

             
        256 T
          1 T

        257 CATTCTTTAC


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.54, C:0.18, G:0.12, T:0.16


Consensus pattern (48 bp):   
TGTAGTAAACGCATTAACCCCAAAAGCCAAAAAGGAAAAAAAAATCTA
Done.