Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00926.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1003 original size:15 final size:17

Alignment explanation


    Indices: 978--1009  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        968 TGTTCATTCG

                             
        978 ATTACTCTAA-TTCATT
          1 ATTACTCTAATTTCATT

                             
        994 ATTA-TCTAATTTCATT
          1 ATTACTCTAATTTCATT

       1010 GAAATTTTGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    5  0.33
  16   10  0.67

ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53


Consensus pattern (17 bp):   
ATTACTCTAATTTCATT
Done.