Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00927.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4996
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:4658 original size:16 final size:16

Alignment explanation


    Indices: 4637--4668  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       4627 CATGAGAATA

                            
       4637 TTTATGCAACAACTTT
          1 TTTATGCAACAACTTT

                            
       4653 TTTATGCAACAACTTT
          1 TTTATGCAACAACTTT

       4669 CTTTTCCATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44


Consensus pattern (16 bp):   
TTTATGCAACAACTTT

Found at i:4974 original size:15 final size:17

Alignment explanation


    Indices: 4949--4980  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

       4939 CCAAAATTTC

                             
       4949 AATGAAATTAGA-TAAT
          1 AATGAAATTAGAGTAAT

                             
       4965 AATG-AATTAGAGTAAT
          1 AATGAAATTAGAGTAAT

       4981 CGAATGAACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    7  0.47
  16    8  0.53

ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31


Consensus pattern (17 bp):   
AATGAAATTAGAGTAAT
Done.