Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00930.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3014
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30


Found at i:2319 original size:3 final size:3

Alignment explanation


    Indices: 2292--2333  Score: 57
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       2282 AGCCTCAGAG

                  *           *       *                            
       2292 GAT GAA GAT GAT GAA GAT GAA GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

       2334 AGCGAAGATG


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.40, C:0.00, G:0.33, T:0.26


Consensus pattern (3 bp):   
GAT

Done.