Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00948.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3469
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:993 original size:19 final size:20

Alignment explanation


    Indices: 957--994  Score: 51
    Period size: 19  Copynumber: 1.9  Consensus size: 20

        947 TTAGATTGTT

                       * *      
        957 AAAATAATAATTATATAAAA
          1 AAAATAATAATCAGATAAAA

                               
        977 AAAATAA-AATCAGATAAA
          1 AAAATAATAATCAGATAAA

        995 GTACAATGAT


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  19    9  0.56
  20    7  0.44

ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24


Consensus pattern (20 bp):   
AAAATAATAATCAGATAAAA
Done.